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start [2013/12/21 21:13]
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start [2014/09/25 13:10] (current)
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-====== Welcome to BacTrack ​Wiki pages ======+====== Welcome to BactImAs ​Wiki pages ======
  
  
-**BacTrack ​is an open-source multi platform java application** intended to assist the researcher in tracking various organisms in sequences of images and obtaining and visualizing their quantitative data.  ​+**BactImAs ​is an open-source multi platform java application** intended to assist the researcher in tracking various organisms in sequences of images and obtaining and visualizing their quantitative data.  ​ 
 + 
 +Bactimas paper is published here: [[http://​dx.doi.org/​10.1186/​1471-2105-15-251|DOI:​10.1186/​1471-2105-15-251]] 
  
  
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 **Solution:​** **Solution:​**
-We've designed ​bactrack ​as a "​platform",​ that is as a collection of somewhat independent well defined modules working together. Such setup facilitates maintenance,​ customization and upgrades. +We've designed ​BactImAs ​as a "​platform",​ that is as a collection of somewhat independent well defined modules working together. Such setup facilitates maintenance,​ customization and upgrades. 
-This property is particularly useful for the tracking algorithms - in BacTrack ​it is possible to include **multiple tracking algorithms** ("​best-of-breed approach"​) and thus use the best fitted algoritm for the problem at hand.  \\+This property is particularly useful for the tracking algorithms - in BactImAs ​it is possible to include **multiple tracking algorithms** ("​best-of-breed approach"​) and thus use the best fitted algoritm for the problem at hand.  \\
 It is even possible to mix-and-match algorithms in a way to segment one part of the movie with algorithm A and the other part with algorithm B. It is even possible to mix-and-match algorithms in a way to segment one part of the movie with algorithm A and the other part with algorithm B.
    
  
-BacTrack ​uses a semi-automated approach: it relies on the user to define the initial cells and all cell divisions. Other than that, the application tracks cells using a our newly developed algorithm. At any point, the user can intervene and correct any unsatisfactory cell detections.+BactImAs ​uses a semi-automated approach: it relies on the user to define the initial cells and all cell divisions. Other than that, the application tracks cells using a our newly developed algorithm. At any point, the user can intervene and correct any unsatisfactory cell detections.
  
-BacTrack ​provides the following features:+BactImAs ​provides the following features:
  
   * Easy to use GUI interface ​   * Easy to use GUI interface ​
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-Example reports produced by BacTrack:+Example reports produced by BactImAs:
  
 {{youtube>​xSpLbs5pe_Y?​medium|BW Report video generated from the program (black outline - computer, white - human) }}  {{youtube>​xSpLbs5pe_Y?​medium|BW Report video generated from the program (black outline - computer, white - human) }} 
 {{youtube>​GKMdunbu6CM?​medium|Color report video generated from the program (green outline - human, red - human) }} {{youtube>​GKMdunbu6CM?​medium|Color report video generated from the program (green outline - human, red - human) }}
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