bactimas.alg

Class MovieProcessor

java.lang.Object

bactimas.alg.MovieProcessor

public class MovieProcessor
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static VPoint[]	n24
static VPoint[]	n8

Constructor Summary

Constructors

Constructor and Description
MovieProcessor()

Method Summary

Methods

Modifier and Type	Method and Description
static void	applySelectionToImageProcessor(ij.gui.Roi r, ij.process.ImageProcessor imp, int pixelValue)
static void	applySelectionToImageProcessorIfNone(ij.gui.Roi r, ij.process.ImageProcessor imp, int pixelValue)
static int	colToValue(java.awt.Color c)
static ij.gui.Roi	createSelectionFromMask(ij.process.ImageProcessor mask, VPoint translation)
static VPoint	detectTranslationSobel(int frameNo, int range)
static void	dumpArrayListToLog(java.util.ArrayList al, java.lang.String title)
static java.util.ArrayList<VPoint>	extractBorderPixels(ij.gui.Roi roi)
static int	getArea(ij.process.ImageProcessor mask)
static java.lang.String	getMaskAsString(ij.process.ImageProcessor mask)
static java.lang.String	getMaskAsString2(ij.process.ImageProcessor mask)
static java.lang.String	getMaskAsString3(ij.process.ImageProcessor mask)
static java.lang.String	getSelectionMaskAsString(int[][] mask)
static VPoint[]	getSkeletonEndpoints(ij.process.ByteProcessor skeletonRoi)
static void	main(java.lang.String[] args)
static void	measure(java.lang.String alternateFormat)
static void	process(int frameFrom, int frameTo)
static void	removeSingleDots(ij.process.ImageProcessor sobel)
static ij.process.ImageProcessor	skeletonize(ij.process.ByteProcessor mask) Implementation of Zhang and Suen thinning algorithm, described here: T.
static ij.process.ImageProcessor	skeletonize(ij.gui.Roi roi) Implementation of Zhang and Suen thinning algorithm, described here: T.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

n24

public static final VPoint[] n24

n8

public static final VPoint[] n8

Constructor Detail

MovieProcessor

public MovieProcessor()

Method Detail

getSelectionMaskAsString

public static java.lang.String getSelectionMaskAsString(int[][] mask)

getMaskAsString

public static java.lang.String getMaskAsString(ij.process.ImageProcessor mask)

getMaskAsString2

public static java.lang.String getMaskAsString2(ij.process.ImageProcessor mask)

getMaskAsString3

public static java.lang.String getMaskAsString3(ij.process.ImageProcessor mask)

createSelectionFromMask

public static ij.gui.Roi createSelectionFromMask(ij.process.ImageProcessor mask,
                                 VPoint translation)

getSkeletonEndpoints

public static VPoint[] getSkeletonEndpoints(ij.process.ByteProcessor skeletonRoi)

applySelectionToImageProcessor

public static void applySelectionToImageProcessor(ij.gui.Roi r,
                                  ij.process.ImageProcessor imp,
                                  int pixelValue)

applySelectionToImageProcessorIfNone

public static void applySelectionToImageProcessorIfNone(ij.gui.Roi r,
                                        ij.process.ImageProcessor imp,
                                        int pixelValue)

detectTranslationSobel

public static VPoint detectTranslationSobel(int frameNo,
                            int range)

measure

public static void measure(java.lang.String alternateFormat)

process

public static void process(int frameFrom,
           int frameTo)

getArea

public static int getArea(ij.process.ImageProcessor mask)

colToValue

public static int colToValue(java.awt.Color c)

extractBorderPixels

public static java.util.ArrayList<VPoint> extractBorderPixels(ij.gui.Roi roi)

dumpArrayListToLog

public static void dumpArrayListToLog(java.util.ArrayList al,
                      java.lang.String title)

skeletonize

public static ij.process.ImageProcessor skeletonize(ij.gui.Roi roi)

Implementation of Zhang and Suen thinning algorithm, described here: T. Y. Zhang and C. Y. Suen "A fast parallel algorithm for thinning digital patterns", Commun. ACM, vol. 27, pp.236 -239 1984

Parameters:

Roi -

Returns:

skeletonize

public static ij.process.ImageProcessor skeletonize(ij.process.ByteProcessor mask)

Implementation of Zhang and Suen thinning algorithm, described here: T. Y. Zhang and C. Y. Suen "A fast parallel algorithm for thinning digital patterns", Commun. ACM, vol. 27, pp.236 -239 1984

Parameters:

mask -

Returns:

removeSingleDots

public static void removeSingleDots(ij.process.ImageProcessor sobel)

main

public static void main(java.lang.String[] args)