Serialized Form

Package bactimas.bintree

Class bactimas.bintree.BTreeVisualizationPane extends javax.swing.JPanel implements Serializable

serialVersionUID:: 1401020454475590665L

Serialized Fields

font
```
java.awt.Font font
```
_root
```
Node _root
```
_maxFrame
```
int _maxFrame
```
_minInt
```
double _minInt
```
_maxInt
```
double _maxInt
```
verticalMargin
```
float verticalMargin
```
horMargin
```
float horMargin
```
_drawLabel
```
boolean _drawLabel
```
_convertToHours
```
boolean _convertToHours
```
width
```
int width
```
height
```
int height
```
_palette
```
java.awt.Color[] _palette
```
_minStrokeWidth
```
int _minStrokeWidth
```
_maxStrokeWidth
```
int _maxStrokeWidth
```
_minSize
```
double _minSize
```
_maxSize
```
double _maxSize
```
_events
```
java.util.LinkedList<E> _events
```
_onColorLabel
```
java.lang.String _onColorLabel
```
_onWidthLabel
```
java.lang.String _onWidthLabel
```

Class bactimas.bintree.Main extends javax.swing.JPanel implements Serializable

serialVersionUID:: 1L

Serialized Fields

txtpnStatus
```
javax.swing.JTextPane txtpnStatus
```
root
```
Node root
```
jpTree
```
javax.swing.JPanel jpTree
```
_maxFrame
```
int _maxFrame
```
_maxLevel
```
int _maxLevel
```
_minInt
```
double _minInt
```
_maxInt
```
double _maxInt
```
_minSize
```
double _minSize
```
_maxSize
```
double _maxSize
```
txtFileName
```
javax.swing.JTextField txtFileName
```

txtMinStrokeWidth

javax.swing.JTextField txtMinStrokeWidth

txtMaxStrokeWidth

javax.swing.JTextField txtMaxStrokeWidth

txtIntensityFileName

javax.swing.JTextField txtIntensityFileName

txtPaletteFileName

javax.swing.JTextField txtPaletteFileName

txtBSizeFileName
```
javax.swing.JTextField txtBSizeFileName
```
drawLabel
```
javax.swing.JCheckBox drawLabel
```
convertToHours
```
javax.swing.JCheckBox convertToHours
```
palette
```
java.util.LinkedList<E> palette
```
document
```
org.w3c.dom.Document document
```
bTreeFileName
```
java.lang.String bTreeFileName
```
intensityFileName
```
java.lang.String intensityFileName
```
paletteFileName
```
java.lang.String paletteFileName
```
bSizeFileName
```
java.lang.String bSizeFileName
```

Package bactimas.gui
- Class bactimas.gui.ControlPanel extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  -1873388061037128863L
  - Serialized Fields
    - jpStrips
```
javax.swing.JPanel jpStrips
```
    - _originalBlueImageStrip
```
ImageStrip _originalBlueImageStrip
```
    - _originalGreenImageStrip
```
ImageStrip _originalGreenImageStrip
```
    - _originalRedImageStrip
```
ImageStrip _originalRedImageStrip
```
    - _frameTree
```
FrameTree _frameTree
```
    - splitPane
```
javax.swing.JSplitPane splitPane
```
- Class bactimas.gui.ExperimentDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - txtExpName
```
javax.swing.JTextField txtExpName
```
    - txtRedName
```
javax.swing.JTextField txtRedName
```
    - txtGreenName
```
javax.swing.JTextField txtGreenName
```
    - txtBlueName
```
javax.swing.JTextField txtBlueName
```
    - txtSpf
```
javax.swing.JTextField txtSpf
```
    - txtPixelWidth
```
javax.swing.JTextField txtPixelWidth
```
    - txtPixelHeight
```
javax.swing.JTextField txtPixelHeight
```
    - txtPictureScale
```
javax.swing.JTextField txtPictureScale
```
    - panel
```
javax.swing.JPanel panel
```
    - _actionType
```
int _actionType
```
- Class bactimas.gui.ImageControl extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  -6739455157949916142L
  - Serialized Fields
    - image
```
java.awt.image.BufferedImage image
```
    - _frameNo
```
int _frameNo
```
    - _file
```
java.io.File _file
```
Package bactimas.gui.frametree
- Class bactimas.gui.frametree.FrameTree extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  9166734113852714762L
  - Serialized Fields
    - rootNode
```
javax.swing.tree.DefaultMutableTreeNode rootNode
```
    - treeModel
```
javax.swing.tree.DefaultTreeModel treeModel
```
    - tree
```
javax.swing.JTree tree
```
    - toolkit
```
java.awt.Toolkit toolkit
```
- Class bactimas.gui.frametree.FrameTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable
  
  serialVersionUID:
  
  519960534254500195L
Package bactimas.gui.sql
- Class bactimas.gui.sql.QueryTableModel extends javax.swing.table.AbstractTableModel implements Serializable
  
  serialVersionUID:
  
  -1661574317605316512L
  - Serialized Fields
    - cache
```
java.util.Vector<E> cache
```
    - colCount
```
int colCount
```
    - headers
```
java.lang.String[] headers
```
    - db
```
java.sql.Connection db
```
    - currentURL
```
java.lang.String currentURL
```
- Class bactimas.gui.sql.SQLQueryPane extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  8615052258516395164L
  - Serialized Fields
    - queryField
```
javax.swing.JTextArea queryField
```
    - statusBar
```
javax.swing.JLabel statusBar
```
    - qtm
```
QueryTableModel qtm
```

Package ij.plugin.frame

Class ij.plugin.frame.Channels extends ij.plugin.frame.PlugInDialog implements Serializable
- Serialized Fields
  - choice
```
java.awt.Choice choice
```
  - checkbox
```
java.awt.Checkbox[] checkbox
```
  - moreButton
```
java.awt.Button moreButton
```
  - id
```
int id
```
  - pm
```
java.awt.PopupMenu pm
```
Class ij.plugin.frame.ColorPicker extends ij.plugin.frame.PlugInDialog implements Serializable

Class ij.plugin.frame.ColorThresholder extends ij.plugin.frame.PlugInFrame implements Serializable

Serialized Fields

flag
```
boolean flag
```
colorSpace
```
int colorSpace
```
thread
```
java.lang.Thread thread
```

plot

ij.plugin.frame.ColorThresholder.BandPlot plot

splot

ij.plugin.frame.ColorThresholder.BandPlot splot

bplot

ij.plugin.frame.ColorThresholder.BandPlot bplot

sliderRange
```
int sliderRange
```
panel
```
java.awt.Panel panel
```
panelt
```
java.awt.Panel panelt
```
originalB
```
java.awt.Button originalB
```
filteredB
```
java.awt.Button filteredB
```
stackB
```
java.awt.Button stackB
```
helpB
```
java.awt.Button helpB
```
sampleB
```
java.awt.Button sampleB
```
resetallB
```
java.awt.Button resetallB
```
newB
```
java.awt.Button newB
```
macroB
```
java.awt.Button macroB
```
selectB
```
java.awt.Button selectB
```
bandPassH
```
java.awt.Checkbox bandPassH
```
bandPassS
```
java.awt.Checkbox bandPassS
```
bandPassB
```
java.awt.Checkbox bandPassB
```
darkBackground
```
java.awt.Checkbox darkBackground
```
colourMode
```
java.awt.CheckboxGroup colourMode
```
colorSpaceChoice
```
java.awt.Choice colorSpaceChoice
```
methodChoice
```
java.awt.Choice methodChoice
```
modeChoice
```
java.awt.Choice modeChoice
```
previousImageID
```
int previousImageID
```
previousSlice
```
int previousSlice
```
ij
```
ij.ImageJ ij
```
minHue
```
int minHue
```
minSat
```
int minSat
```
minBri
```
int minBri
```
maxHue
```
int maxHue
```
maxSat
```
int maxSat
```
maxBri
```
int maxBri
```
minSlider
```
java.awt.Scrollbar minSlider
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
minSlider2
```
java.awt.Scrollbar minSlider2
```
maxSlider2
```
java.awt.Scrollbar maxSlider2
```
minSlider3
```
java.awt.Scrollbar minSlider3
```
maxSlider3
```
java.awt.Scrollbar maxSlider3
```
label1
```
java.awt.Label label1
```
label2
```
java.awt.Label label2
```
label3
```
java.awt.Label label3
```
label4
```
java.awt.Label label4
```
label5
```
java.awt.Label label5
```
label6
```
java.awt.Label label6
```
labelh
```
java.awt.Label labelh
```
labels
```
java.awt.Label labels
```
labelb
```
java.awt.Label labelb
```
labelf
```
java.awt.Label labelf
```
done
```
boolean done
```
hSource
```
byte[] hSource
```
sSource
```
byte[] sSource
```
bSource
```
byte[] bSource
```
applyingStack
```
boolean applyingStack
```
numSlices
```
int numSlices
```
stack
```
ij.ImageStack stack
```
width
```
int width
```
height
```
int height
```
numPixels
```
int numPixels
```

Class ij.plugin.frame.ContrastAdjuster extends ij.plugin.frame.PlugInDialog implements Serializable

Serialized Fields

plot
```
ij.plugin.frame.ContrastPlot plot
```
thread
```
java.lang.Thread thread
```
minSliderValue
```
int minSliderValue
```
maxSliderValue
```
int maxSliderValue
```
brightnessValue
```
int brightnessValue
```
contrastValue
```
int contrastValue
```
sliderRange
```
int sliderRange
```
doAutoAdjust
```
boolean doAutoAdjust
```
doReset
```
boolean doReset
```
doSet
```
boolean doSet
```
doApplyLut
```
boolean doApplyLut
```
panel
```
java.awt.Panel panel
```
tPanel
```
java.awt.Panel tPanel
```
autoB
```
java.awt.Button autoB
```
resetB
```
java.awt.Button resetB
```
setB
```
java.awt.Button setB
```
applyB
```
java.awt.Button applyB
```
previousImageID
```
int previousImageID
```
previousType
```
int previousType
```
previousSlice
```
int previousSlice
```
previousSnapshot
```
java.lang.Object previousSnapshot
```
ij
```
ij.ImageJ ij
```
min
```
double min
```
max
```
double max
```
previousMin
```
double previousMin
```
previousMax
```
double previousMax
```
defaultMin
```
double defaultMin
```
defaultMax
```
double defaultMax
```
contrast
```
int contrast
```
brightness
```
int brightness
```
RGBImage
```
boolean RGBImage
```
minSlider
```
java.awt.Scrollbar minSlider
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
contrastSlider
```
java.awt.Scrollbar contrastSlider
```
brightnessSlider
```
java.awt.Scrollbar brightnessSlider
```
minLabel
```
java.awt.Label minLabel
```
maxLabel
```
java.awt.Label maxLabel
```
windowLabel
```
java.awt.Label windowLabel
```
levelLabel
```
java.awt.Label levelLabel
```
done
```
boolean done
```
autoThreshold
```
int autoThreshold
```
gridbag
```
java.awt.GridBagLayout gridbag
```
c
```
java.awt.GridBagConstraints c
```
y
```
int y
```
windowLevel
```
boolean windowLevel
```
balance
```
boolean balance
```
monoFont
```
java.awt.Font monoFont
```
sanFont
```
java.awt.Font sanFont
```
channels
```
int channels
```
choice
```
java.awt.Choice choice
```

Class ij.plugin.frame.Editor extends ij.plugin.frame.PlugInFrame implements Serializable

Serialized Fields

ta
```
java.awt.TextArea ta
```
path
```
java.lang.String path
```
changes
```
boolean changes
```
fileMenu
```
java.awt.Menu fileMenu
```
editMenu
```
java.awt.Menu editMenu
```
p
```
java.util.Properties p
```
macroStarts
```
int[] macroStarts
```
macroNames
```
java.lang.String[] macroNames
```
mb
```
java.awt.MenuBar mb
```
macrosMenu
```
java.awt.Menu macrosMenu
```
nMacros
```
int nMacros
```
pgm
```
ij.macro.Program pgm
```
eventCount
```
int eventCount
```
shortcutsInUse
```
java.lang.String shortcutsInUse
```
inUseCount
```
int inUseCount
```
installer
```
ij.plugin.MacroInstaller installer
```
dontShowWindow
```
boolean dontShowWindow
```
sizes
```
int[] sizes
```
fontSize
```
int fontSize
```
monospaced
```
java.awt.CheckboxMenuItem monospaced
```
isMacroWindow
```
boolean isMacroWindow
```
debugStart
```
int debugStart
```
debugEnd
```
int debugEnd
```
step
```
boolean step
```
previousLine
```
int previousLine
```
runToLine
```
int runToLine
```
fixedLineEndings
```
boolean fixedLineEndings
```
downloadUrl
```
java.lang.String downloadUrl
```
downloading
```
boolean downloading
```
functionFinder
```
ij.macro.FunctionFinder functionFinder
```
undoBuffer
```
java.util.ArrayList<E> undoBuffer
```
performingUndo
```
boolean performingUndo
```

Class ij.plugin.frame.Fitter extends ij.plugin.frame.PlugInFrame implements Serializable

Serialized Fields

fit
```
java.awt.Choice fit
```
doIt
```
java.awt.Button doIt
```
open
```
java.awt.Button open
```
apply
```
java.awt.Button apply
```
settings
```
java.awt.Checkbox settings
```
fitTypeStr
```
java.lang.String fitTypeStr
```
textArea
```
java.awt.TextArea textArea
```
dx
```
double[] dx
```
dy
```
double[] dy
```
x
```
double[] x
```
y
```
double[] y
```

Class ij.plugin.frame.LineWidthAdjuster extends ij.plugin.frame.PlugInFrame implements Serializable
- Serialized Fields
  - sliderRange
```
int sliderRange
```
  - slider
```
java.awt.Scrollbar slider
```
  - value
```
int value
```
  - setText
```
boolean setText
```
  - thread
```
java.lang.Thread thread
```
  - done
```
boolean done
```
  - tf
```
java.awt.TextField tf
```
  - checkbox
```
java.awt.Checkbox checkbox
```
Class ij.plugin.frame.MemoryMonitor extends ij.plugin.frame.PlugInFrame implements Serializable
- Serialized Fields
  - image
```
java.awt.Image image
```
  - g
```
java.awt.Graphics2D g
```
  - frames
```
int frames
```
  - mem
```
double[] mem
```
  - index
```
int index
```
  - value
```
long value
```
  - defaultMax
```
double defaultMax
```
  - max
```
double max
```
  - maxMemory
```
long maxMemory
```
Class ij.plugin.frame.PasteController extends ij.plugin.frame.PlugInFrame implements Serializable
- Serialized Fields
  - panel
```
java.awt.Panel panel
```
  - pasteMode
```
java.awt.Choice pasteMode
```
Class ij.plugin.frame.PlugInDialog extends java.awt.Dialog implements Serializable
- Serialized Fields
  - title
```
java.lang.String title
```
Class ij.plugin.frame.PlugInFrame extends java.awt.Frame implements Serializable
- Serialized Fields
  - title
```
java.lang.String title
```
Class ij.plugin.frame.Recorder extends ij.plugin.frame.PlugInFrame implements Serializable
- Serialized Fields
  - mode
```
java.awt.Choice mode
```
  - makeMacro
```
java.awt.Button makeMacro
```
  - help
```
java.awt.Button help
```
  - fileName
```
java.awt.TextField fileName
```
  - fitTypeStr
```
java.lang.String fitTypeStr
```

Class ij.plugin.frame.RoiManager extends ij.plugin.frame.PlugInFrame implements Serializable

Serialized Fields

panel
```
java.awt.Panel panel
```
list
```
javax.swing.JList<E> list
```

listModel

javax.swing.DefaultListModel<E> listModel

rois
```
java.util.Hashtable<K,V> rois
```
canceled
```
boolean canceled
```
macro
```
boolean macro
```
ignoreInterrupts
```
boolean ignoreInterrupts
```
pm
```
java.awt.PopupMenu pm
```
moreButton
```
java.awt.Button moreButton
```
colorButton
```
java.awt.Button colorButton
```
showAllCheckbox
```
java.awt.Checkbox showAllCheckbox
```
labelsCheckbox
```
java.awt.Checkbox labelsCheckbox
```
prevID
```
int prevID
```
noUpdateMode
```
boolean noUpdateMode
```
defaultLineWidth
```
int defaultLineWidth
```
defaultColor
```
java.awt.Color defaultColor
```
firstTime
```
boolean firstTime
```
selectedIndexes
```
int[] selectedIndexes
```
appendResults
```
boolean appendResults
```
mmResults
```
ij.measure.ResultsTable mmResults
```
imageID
```
int imageID
```

Class ij.plugin.frame.SyncWindows extends ij.plugin.frame.PlugInFrame implements Serializable

Serialized Fields

vwins
```
java.util.Vector<E> vwins
```
oldX
```
int oldX
```
oldY
```
int oldY
```
x
```
int x
```
y
```
int y
```
wList
```
java.awt.List wList
```
panel
```
java.awt.Panel panel
```
cCursor
```
java.awt.Checkbox cCursor
```
cSlice
```
java.awt.Checkbox cSlice
```
cChannel
```
java.awt.Checkbox cChannel
```
cFrame
```
java.awt.Checkbox cFrame
```
cCoords
```
java.awt.Checkbox cCoords
```
cScaling
```
java.awt.Checkbox cScaling
```
bSyncAll
```
java.awt.Button bSyncAll
```
bUnsyncAll
```
java.awt.Button bUnsyncAll
```
vListMap
```
java.util.Vector<E> vListMap
```
ijInstance
```
ij.ImageJ ijInstance
```
currentMag
```
double currentMag
```
currentSrcRect
```
java.awt.Rectangle currentSrcRect
```

Class ij.plugin.frame.ThresholdAdjuster extends ij.plugin.frame.PlugInDialog implements Serializable

Serialized Fields

plot
```
ij.plugin.frame.ThresholdPlot plot
```
thread
```
java.lang.Thread thread
```
minValue
```
int minValue
```
maxValue
```
int maxValue
```
sliderRange
```
int sliderRange
```
doAutoAdjust
```
boolean doAutoAdjust
```
doReset
```
boolean doReset
```
doApplyLut
```
boolean doApplyLut
```
doStateChange
```
boolean doStateChange
```
doSet
```
boolean doSet
```
panel
```
java.awt.Panel panel
```
autoB
```
java.awt.Button autoB
```
resetB
```
java.awt.Button resetB
```
applyB
```
java.awt.Button applyB
```
setB
```
java.awt.Button setB
```
previousImageID
```
int previousImageID
```
previousImageType
```
int previousImageType
```
previousRoiHashCode
```
int previousRoiHashCode
```
previousMin
```
double previousMin
```
previousMax
```
double previousMax
```
previousSlice
```
int previousSlice
```
imageWasUpdated
```
boolean imageWasUpdated
```
ij
```
ij.ImageJ ij
```
minThreshold
```
double minThreshold
```
maxThreshold
```
double maxThreshold
```
minSlider
```
java.awt.Scrollbar minSlider
```
maxSlider
```
java.awt.Scrollbar maxSlider
```
label1
```
java.awt.Label label1
```
label2
```
java.awt.Label label2
```
percentiles
```
java.awt.Label percentiles
```
done
```
boolean done
```
lutColor
```
int lutColor
```
methodChoice
```
java.awt.Choice methodChoice
```
modeChoice
```
java.awt.Choice modeChoice
```
darkBackground
```
java.awt.Checkbox darkBackground
```
stackHistogram
```
java.awt.Checkbox stackHistogram
```
firstActivation
```
boolean firstActivation
```

Package signalprocesser.shared
- Class signalprocesser.shared.JCollapsiblePanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - iscollapsed
```
boolean iscollapsed
```
    - innercomponent
```
javax.swing.JPanel innercomponent
```
- Class signalprocesser.shared.StatusDialog extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    - lblCaption
```
javax.swing.JLabel lblCaption
```
    - panelCenter
```
javax.swing.JPanel panelCenter
```
    - panelGap
```
javax.swing.JPanel panelGap
```
    - progressBar
```
javax.swing.JProgressBar progressBar
```

Package signalprocesser.voronoi

Class signalprocesser.voronoi.VoronoiTest extends javax.swing.JFrame implements Serializable

serialVersionUID:: 3374037057626900609L

Serialized Fields

groupMatt
```
javax.swing.ButtonGroup groupMatt
```
SHOW_POINTS
```
boolean SHOW_POINTS
```
SHOW_POINT_COORDINATES
```
boolean SHOW_POINT_COORDINATES
```
SHOW_MOUSE_LOCATION
```
boolean SHOW_MOUSE_LOCATION
```
SHOW_INTERACTIVE_SWEEPLINE
```
boolean SHOW_INTERACTIVE_SWEEPLINE
```
SHOW_CIRCLEEVENTS
```
boolean SHOW_CIRCLEEVENTS
```
SHOW_EXPECTED_BORDER
```
boolean SHOW_EXPECTED_BORDER
```
SHOW_INTERSECTION_WITH_EXPECTED
```
boolean SHOW_INTERSECTION_WITH_EXPECTED
```
SHOW_ALPHA_SHAPE
```
boolean SHOW_ALPHA_SHAPE
```
backupboundaryenhancedvalue
```
int backupboundaryenhancedvalue
```
expectedarea
```
double expectedarea
```
lastdirectoryopened
```
java.lang.String lastdirectoryopened
```
countrylistmodel
```
CountryListModel countrylistmodel
```
alphashape
```
java.awt.Shape alphashape
```
panel
```
VoronoiTest.SignalPanel panel
```
points
```
java.util.ArrayList<E> points
```
borderpoints
```
java.util.ArrayList<E> borderpoints
```

representationwrapper

VoronoiTest.TestRepresentationWrapper representationwrapper

representation
```
AbstractRepresentation representation
```
btnClearPoints
```
javax.swing.JButton btnClearPoints
```
btnExit
```
javax.swing.JButton btnExit
```
btnExportToSVG
```
javax.swing.JButton btnExportToSVG
```
btnGenerate
```
javax.swing.JButton btnGenerate
```
btnLoad
```
javax.swing.JButton btnLoad
```
btnSave
```
javax.swing.JButton btnSave
```
btnTestSuiteForm
```
javax.swing.JButton btnTestSuiteForm
```
cboCountries
```
javax.swing.JComboBox<E> cboCountries
```
cboFont
```
javax.swing.JComboBox<E> cboFont
```

cboInternalMinDensity

javax.swing.JComboBox<E> cboInternalMinDensity

cboInternalPoints

javax.swing.JComboBox<E> cboInternalPoints

cboShapePointMinDensity

javax.swing.JComboBox<E> cboShapePointMinDensity

cboShapePoints
```
javax.swing.JComboBox<E> cboShapePoints
```

chkAddShapePointsToSplitLongLines

javax.swing.JCheckBox chkAddShapePointsToSplitLongLines

chkMaxEdgesToRemove

javax.swing.JCheckBox chkMaxEdgesToRemove

chkShowCircleEvents

javax.swing.JCheckBox chkShowCircleEvents

chkShowDebugInfo
```
javax.swing.JCheckBox chkShowDebugInfo
```

chkShowEdgeLengths

javax.swing.JCheckBox chkShowEdgeLengths

chkShowExpectedBorder

javax.swing.JCheckBox chkShowExpectedBorder

chkShowInternalTriangles

javax.swing.JCheckBox chkShowInternalTriangles

chkShowIntersection

javax.swing.JCheckBox chkShowIntersection

chkShowMinimumSpanningTree

javax.swing.JCheckBox chkShowMinimumSpanningTree

chkShowMouseLocation

javax.swing.JCheckBox chkShowMouseLocation

chkShowPointCoordinates

javax.swing.JCheckBox chkShowPointCoordinates

chkShowPoints
```
javax.swing.JCheckBox chkShowPoints
```
chkShowSweepline
```
javax.swing.JCheckBox chkShowSweepline
```

chkShowTreeStructure

javax.swing.JCheckBox chkShowTreeStructure

groupEdgeRemoval

javax.swing.ButtonGroup groupEdgeRemoval

groupGenerationType

javax.swing.ButtonGroup groupGenerationType

groupRepresentations

javax.swing.ButtonGroup groupRepresentations

jPanel1
```
javax.swing.JPanel jPanel1
```
jPanel10
```
javax.swing.JPanel jPanel10
```
jPanel2
```
javax.swing.JPanel jPanel2
```
jPanel3
```
javax.swing.JPanel jPanel3
```
jPanel4
```
javax.swing.JPanel jPanel4
```
jPanel5
```
javax.swing.JPanel jPanel5
```
jPanel6
```
javax.swing.JPanel jPanel6
```
jPanel7
```
javax.swing.JPanel jPanel7
```
jPanel8
```
javax.swing.JPanel jPanel8
```
jPanel9
```
javax.swing.JPanel jPanel9
```
lblActualArea
```
javax.swing.JLabel lblActualArea
```
lblActualPerimeter
```
javax.swing.JLabel lblActualPerimeter
```

lblErrorFromExpectedArea

javax.swing.JLabel lblErrorFromExpectedArea

lblExpectedArea
```
javax.swing.JLabel lblExpectedArea
```
lblExpectedPerimeter
```
javax.swing.JLabel lblExpectedPerimeter
```
lblFont
```
javax.swing.JLabel lblFont
```
lblGenerationType
```
javax.swing.JLabel lblGenerationType
```

lblInternalMinDensity

javax.swing.JLabel lblInternalMinDensity

lblInternalPoints
```
javax.swing.JLabel lblInternalPoints
```
lblL2Norm
```
javax.swing.JLabel lblL2Norm
```

lblShapePointMinDensity

javax.swing.JLabel lblShapePointMinDensity

lblShapePoints
```
javax.swing.JLabel lblShapePoints
```

optApplyAboveMSTAndSmallestTEdgeInProportion

javax.swing.JRadioButton optApplyAboveMSTAndSmallestTEdgeInProportion

optBoundary
```
javax.swing.JRadioButton optBoundary
```

optBoundaryEnhanced

javax.swing.JRadioButton optBoundaryEnhanced

optBoundaryUsingAngle20

javax.swing.JRadioButton optBoundaryUsingAngle20

optBoundaryUsingAngle30

javax.swing.JRadioButton optBoundaryUsingAngle30

optClustering
```
javax.swing.JRadioButton optClustering
```

optCountryGeneration

javax.swing.JRadioButton optCountryGeneration

optEdgeRemoval
```
javax.swing.JRadioButton optEdgeRemoval
```

optLetterGeneration

javax.swing.JRadioButton optLetterGeneration

optMaxEdgeOfMinSpanningTree

javax.swing.JRadioButton optMaxEdgeOfMinSpanningTree

optMaxEdgeOfSmallestTEdge

javax.swing.JRadioButton optMaxEdgeOfSmallestTEdge

optNoLengthRestriction

javax.swing.JRadioButton optNoLengthRestriction

optNone
```
javax.swing.JRadioButton optNone
```

optNormalisedLengthRestriction

javax.swing.JRadioButton optNormalisedLengthRestriction

optSimpleTriangulation

javax.swing.JRadioButton optSimpleTriangulation

optUserLengthRestriction

javax.swing.JRadioButton optUserLengthRestriction

optVoronoiCells

javax.swing.JRadioButton optVoronoiCells

panelActions
```
javax.swing.JPanel panelActions
```
panelActionsInner
```
javax.swing.JPanel panelActionsInner
```

panelBoundaryEnhanced

javax.swing.JPanel panelBoundaryEnhanced

panelCenter
```
javax.swing.JPanel panelCenter
```
panelCheckBoxes
```
javax.swing.JPanel panelCheckBoxes
```
panelClearPoints
```
javax.swing.JPanel panelClearPoints
```
panelEdgeRemoval
```
javax.swing.JPanel panelEdgeRemoval
```

panelEdgeRemovalOptions

javax.swing.JPanel panelEdgeRemovalOptions

panelGap
```
javax.swing.JPanel panelGap
```
panelGap1
```
javax.swing.JPanel panelGap1
```
panelGapSouth
```
javax.swing.JPanel panelGapSouth
```
panelGapSouth1
```
javax.swing.JPanel panelGapSouth1
```
panelGapWest
```
javax.swing.JPanel panelGapWest
```
panelGapWest1
```
javax.swing.JPanel panelGapWest1
```
panelGapWest2
```
javax.swing.JPanel panelGapWest2
```
panelGenerate
```
javax.swing.JPanel panelGenerate
```

panelGenerationSelection

javax.swing.JPanel panelGenerationSelection

panelGenerationType
```
javax.swing.JPanel panelGenerationType
```
panelLeft
```
javax.swing.JPanel panelLeft
```
panelOptions
```
javax.swing.JPanel panelOptions
```
panelPointOptions
```
javax.swing.JPanel panelPointOptions
```
panelPoints
```
javax.swing.JPanel panelPoints
```
panelPointsInner
```
javax.swing.JPanel panelPointsInner
```
panelRepresentations
```
javax.swing.JPanel panelRepresentations
```
panelRight
```
javax.swing.JPanel panelRight
```
panelStatCaptions
```
javax.swing.JPanel panelStatCaptions
```
panelStatLabels
```
javax.swing.JPanel panelStatLabels
```
panelStatistics
```
javax.swing.JPanel panelStatistics
```
panelTop
```
javax.swing.JPanel panelTop
```
scrollRight
```
javax.swing.JScrollPane scrollRight
```

sliderApplyInProportion

javax.swing.JSlider sliderApplyInProportion

sliderAreaCutOffToUse

javax.swing.JSlider sliderAreaCutOffToUse

sliderLengthRestriction

javax.swing.JSlider sliderLengthRestriction

sliderMaxEdgesToRemove

javax.swing.JSlider sliderMaxEdgesToRemove

sliderNormalisedLengthRestriction

javax.swing.JSlider sliderNormalisedLengthRestriction

txtActualArea
```
javax.swing.JLabel txtActualArea
```
txtActualPerimeter
```
javax.swing.JLabel txtActualPerimeter
```

txtErrorFromExpectedArea

javax.swing.JLabel txtErrorFromExpectedArea

txtExpectedArea
```
javax.swing.JLabel txtExpectedArea
```
txtExpectedPerimeter
```
javax.swing.JLabel txtExpectedPerimeter
```
txtL2Norm
```
javax.swing.JLabel txtL2Norm
```
txtLetter
```
javax.swing.JTextField txtLetter
```

Class signalprocesser.voronoi.VoronoiTest.SignalPanel extends javax.swing.JPanel implements Serializable
- Serialized Fields
  - mouse_x
```
int mouse_x
```
  - mouse_y
```
int mouse_y
```
  - attentiontopoint
```
int attentiontopoint
```
  - attentiontovpoint
```
VPoint attentiontovpoint
```
  - attentiontovpoint_onclick
```
VPoint attentiontovpoint_onclick
```

Package signalprocesser.voronoi.representation.triangulation
- Class signalprocesser.voronoi.representation.triangulation.VCluster extends java.util.ArrayList<VPoint> implements Serializable
Package signalprocesser.voronoi.shapegeneration
- Class signalprocesser.voronoi.shapegeneration.ShapeGenerationException extends java.lang.Exception implements Serializable
  
  serialVersionUID:
  
  561508625852681596L
Package signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug
- Class signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug.DebugTree extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  -159365573586530711L
  - Serialized Fields
    - sweepline
```
int sweepline
```
    - rootnode
```
VNode rootnode
```
    - panel
```
DebugTree.TreePanel panel
```
- Class signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug.DebugTree.TreePanel extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  -5831323478327211975L

Package signalprocesser.voronoi.tools

Class signalprocesser.voronoi.tools.CountryListModel extends javax.swing.AbstractListModel<java.lang.Object> implements Serializable

serialVersionUID:

-840668407852825699L
- Serialized Fields
  - combobox
```
javax.swing.JComboBox<E> combobox
```
  - selectedcountry
```
java.lang.String selectedcountry
```
  - countries
```
java.util.ArrayList<E> countries
```
Class signalprocesser.voronoi.tools.CountryListModel.CountryListRender extends javax.swing.plaf.basic.BasicComboBoxRenderer implements Serializable

serialVersionUID:

-4012834345432860070L

Class signalprocesser.voronoi.tools.TestSuite extends javax.swing.JDialog implements Serializable

serialVersionUID:: 5217604961740184170L

Serialized Fields

exitonclose
```
boolean exitonclose
```
mode
```
int mode
```
countrylistmodel
```
CountryListModel countrylistmodel
```

testcasemodel

TestSuite.TestCaseTableModel testcasemodel

testcases
```
java.util.ArrayList<E> testcases
```
MUTEX
```
java.lang.Object MUTEX
```
btnAddTestCase
```
javax.swing.JButton btnAddTestCase
```
btnDeleteSelected
```
javax.swing.JButton btnDeleteSelected
```
btnDensityParameter
```
javax.swing.JButton btnDensityParameter
```
btnLengthParameter
```
javax.swing.JButton btnLengthParameter
```
btnMoveDown
```
javax.swing.JButton btnMoveDown
```
btnMoveUp
```
javax.swing.JButton btnMoveUp
```

btnNormalisedLengthParameter

javax.swing.JButton btnNormalisedLengthParameter

btnRunAll
```
javax.swing.JButton btnRunAll
```
cboCountries
```
javax.swing.JComboBox<E> cboCountries
```
cboFont
```
javax.swing.JComboBox<E> cboFont
```

cboInternalMinDensity

javax.swing.JComboBox<E> cboInternalMinDensity

cboInternalPoints

javax.swing.JComboBox<E> cboInternalPoints

cboLengthCutoff

javax.swing.JComboBox<E> cboLengthCutoff

cboShapePointMinDensity

javax.swing.JComboBox<E> cboShapePointMinDensity

cboShapePoints
```
javax.swing.JComboBox<E> cboShapePoints
```

chkAddShapePointsToSplitLongLines

javax.swing.JCheckBox chkAddShapePointsToSplitLongLines

chkRunDensity
```
javax.swing.JCheckBox chkRunDensity
```
chkRunLength
```
javax.swing.JCheckBox chkRunLength
```

chkRunNormalisedLength

javax.swing.JCheckBox chkRunNormalisedLength

groupGenerationType

javax.swing.ButtonGroup groupGenerationType

jPanel1
```
javax.swing.JPanel jPanel1
```
jPanel2
```
javax.swing.JPanel jPanel2
```
jPanel3
```
javax.swing.JPanel jPanel3
```
jPanel4
```
javax.swing.JPanel jPanel4
```
jPanel5
```
javax.swing.JPanel jPanel5
```
jPanel6
```
javax.swing.JPanel jPanel6
```
jPanel7
```
javax.swing.JPanel jPanel7
```
jScrollPane1
```
javax.swing.JScrollPane jScrollPane1
```
lblDensityIncrements
```
javax.swing.JLabel lblDensityIncrements
```
lblEndDensity
```
javax.swing.JLabel lblEndDensity
```
lblEndLength
```
javax.swing.JLabel lblEndLength
```
lblEndLength1
```
javax.swing.JLabel lblEndLength1
```
lblFont2
```
javax.swing.JLabel lblFont2
```
lblGenerationType2
```
javax.swing.JLabel lblGenerationType2
```
lblHeight
```
javax.swing.JLabel lblHeight
```

lblInternalMinDensity

javax.swing.JLabel lblInternalMinDensity

lblInternalPoints
```
javax.swing.JLabel lblInternalPoints
```
lblLengthCutoff
```
javax.swing.JLabel lblLengthCutoff
```
lblLengthIncrements
```
javax.swing.JLabel lblLengthIncrements
```
lblLengthIncrements1
```
javax.swing.JLabel lblLengthIncrements1
```
lblOutputDir
```
javax.swing.JLabel lblOutputDir
```
lblOverall
```
javax.swing.JLabel lblOverall
```
lblPixels
```
javax.swing.JLabel lblPixels
```
lblPixels1
```
javax.swing.JLabel lblPixels1
```

lblShapePointMinDensity

javax.swing.JLabel lblShapePointMinDensity

lblShapePoints
```
javax.swing.JLabel lblShapePoints
```
lblStartDensity
```
javax.swing.JLabel lblStartDensity
```
lblStartLength
```
javax.swing.JLabel lblStartLength
```
lblStartLength1
```
javax.swing.JLabel lblStartLength1
```
lblStatus
```
javax.swing.JLabel lblStatus
```
lblTestcases
```
javax.swing.JLabel lblTestcases
```

lblTimesToExecuteEachTestcase

javax.swing.JLabel lblTimesToExecuteEachTestcase

lblWidth
```
javax.swing.JLabel lblWidth
```

optCountryGeneration

javax.swing.JRadioButton optCountryGeneration

optLetterGeneration

javax.swing.JRadioButton optLetterGeneration

panelCaptions2
```
javax.swing.JPanel panelCaptions2
```
panelCenter
```
javax.swing.JPanel panelCenter
```
panelCenter1
```
javax.swing.JPanel panelCenter1
```
panelCenter2
```
javax.swing.JPanel panelCenter2
```
panelCenter4
```
javax.swing.JPanel panelCenter4
```
panelCenterPanel
```
javax.swing.JPanel panelCenterPanel
```
panelCenterPanel1
```
javax.swing.JPanel panelCenterPanel1
```
panelCenterPanel2
```
javax.swing.JPanel panelCenterPanel2
```

panelDensityParameter

javax.swing.JPanel panelDensityParameter

panelExecutionOptions

javax.swing.JPanel panelExecutionOptions

panelGap1
```
javax.swing.JPanel panelGap1
```
panelGap10
```
javax.swing.JPanel panelGap10
```
panelGap11
```
javax.swing.JPanel panelGap11
```
panelGap12
```
javax.swing.JPanel panelGap12
```
panelGap13
```
javax.swing.JPanel panelGap13
```
panelGap14
```
javax.swing.JPanel panelGap14
```
panelGap15
```
javax.swing.JPanel panelGap15
```
panelGap16
```
javax.swing.JPanel panelGap16
```
panelGap2
```
javax.swing.JPanel panelGap2
```
panelGap3
```
javax.swing.JPanel panelGap3
```
panelGap4
```
javax.swing.JPanel panelGap4
```
panelGap5
```
javax.swing.JPanel panelGap5
```
panelGap6
```
javax.swing.JPanel panelGap6
```
panelGap7
```
javax.swing.JPanel panelGap7
```
panelGap8
```
javax.swing.JPanel panelGap8
```
panelGap9
```
javax.swing.JPanel panelGap9
```
panelGenerate2
```
javax.swing.JPanel panelGenerate2
```

panelGenerationSelection

javax.swing.JPanel panelGenerationSelection

panelGenerationType2
```
javax.swing.JPanel panelGenerationType2
```
panelInCenter
```
javax.swing.JPanel panelInCenter
```
panelLeft
```
javax.swing.JPanel panelLeft
```
panelLeft1
```
javax.swing.JPanel panelLeft1
```
panelLeft2
```
javax.swing.JPanel panelLeft2
```
panelLeft4
```
javax.swing.JPanel panelLeft4
```
panelLengthParameter
```
javax.swing.JPanel panelLengthParameter
```

panelLengthParameters

javax.swing.JPanel panelLengthParameters

panelLengthParameters1

javax.swing.JPanel panelLengthParameters1

panelLengthParameters2

javax.swing.JPanel panelLengthParameters2

panelNormalisedLengthParameter

javax.swing.JPanel panelNormalisedLengthParameter

panelNorth
```
javax.swing.JPanel panelNorth
```
panelNorth1
```
javax.swing.JPanel panelNorth1
```
panelNorth2
```
javax.swing.JPanel panelNorth2
```
panelNorth3
```
javax.swing.JPanel panelNorth3
```
panelOnRight
```
javax.swing.JPanel panelOnRight
```
panelOtherOptions
```
javax.swing.JPanel panelOtherOptions
```
panelPointOptions2
```
javax.swing.JPanel panelPointOptions2
```
panelRunAll
```
javax.swing.JPanel panelRunAll
```

panelRunAllCheckBoxes

javax.swing.JPanel panelRunAllCheckBoxes

panelStatus
```
javax.swing.JPanel panelStatus
```
panelStatusOutter
```
javax.swing.JPanel panelStatusOutter
```
panelTextfields
```
javax.swing.JPanel panelTextfields
```
panelUpNorth
```
javax.swing.JPanel panelUpNorth
```
panelVariables
```
javax.swing.JPanel panelVariables
```

progressOverall

javax.swing.JProgressBar progressOverall

progressTestcases

javax.swing.JProgressBar progressTestcases

scrollPane
```
javax.swing.JScrollPane scrollPane
```

tabsTestCaseType

javax.swing.JTabbedPane tabsTestCaseType

tblTestcases
```
javax.swing.JTable tblTestcases
```

txtDensityIncrements

javax.swing.JTextField txtDensityIncrements

txtEndDensity
```
javax.swing.JTextField txtEndDensity
```
txtEndLength
```
javax.swing.JTextField txtEndLength
```
txtHeight
```
javax.swing.JTextField txtHeight
```

txtLengthIncrements

javax.swing.JTextField txtLengthIncrements

txtLetter
```
javax.swing.JTextField txtLetter
```

txtNormalisedEndLength

javax.swing.JTextField txtNormalisedEndLength

txtNormalisedLengthIncrements

javax.swing.JTextField txtNormalisedLengthIncrements

txtNormalisedStartLength

javax.swing.JTextField txtNormalisedStartLength

txtOutputDir
```
javax.swing.JTextField txtOutputDir
```
txtStartDensity
```
javax.swing.JTextField txtStartDensity
```
txtStartLength
```
javax.swing.JTextField txtStartLength
```

txtTimesToExecuteEachTestcase

javax.swing.JTextField txtTimesToExecuteEachTestcase

txtWidth
```
javax.swing.JTextField txtWidth
```

Class signalprocesser.voronoi.tools.TestSuite.TestCase extends java.lang.Object implements Serializable

serialVersionUID:

-5710576151028307710L
- Serialized Fields
  - font
```
java.awt.Font font
```
  - letter
```
java.lang.String letter
```
  - countryfile
```
java.lang.String countryfile
```
  - lengthcutoff
```
int lengthcutoff
```
  - shapepoints
```
int shapepoints
```
  - shapepoint_mindensity
```
int shapepoint_mindensity
```
  - internalpoints
```
int internalpoints
```
  - internal_mindensity
```
int internal_mindensity
```
  - addshapepointstosplitlonglines
```
boolean addshapepointstosplitlonglines
```
Class signalprocesser.voronoi.tools.TestSuite.TestCaseTableModel extends javax.swing.table.AbstractTableModel implements Serializable

serialVersionUID:

1846047824209622467L

Serialized Form

Package bactimas.bintree

Class bactimas.bintree.BTreeVisualizationPane extends javax.swing.JPanel implements Serializable

Serialized Fields

font

_root

_maxFrame

_minInt

_maxInt

verticalMargin

horMargin

_drawLabel

_convertToHours

width

height

_palette

_minStrokeWidth

_maxStrokeWidth

_minSize

_maxSize

_events

_onColorLabel

_onWidthLabel

Class bactimas.bintree.Main extends javax.swing.JPanel implements Serializable

Serialized Fields

txtpnStatus

root

jpTree

_maxFrame

_maxLevel

_minInt

_maxInt

_minSize

_maxSize

txtFileName

txtMinStrokeWidth

txtMaxStrokeWidth

txtIntensityFileName

txtPaletteFileName

txtBSizeFileName

drawLabel

convertToHours

palette

document

bTreeFileName

intensityFileName

paletteFileName

bSizeFileName

Package bactimas.gui

Class bactimas.gui.ControlPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

jpStrips

_originalBlueImageStrip

_originalGreenImageStrip

_originalRedImageStrip

_frameTree

splitPane

Class bactimas.gui.ExperimentDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

txtExpName

txtRedName

txtGreenName

txtBlueName

txtSpf

txtPixelWidth

txtPixelHeight

txtPictureScale

panel

_actionType

Class bactimas.gui.ImageControl extends javax.swing.JPanel implements Serializable

Serialized Fields

image

_frameNo

_file

Package bactimas.gui.frametree

Class bactimas.gui.frametree.FrameTree extends javax.swing.JPanel implements Serializable

Serialized Fields

rootNode

treeModel

tree