bactimas.algorithms

Class CopyAndAdjustAlgorithm

java.lang.Object

bactimas.algorithms.CopyAndAdjustAlgorithm

All Implemented Interfaces:

ITrackingAlgorithm

Direct Known Subclasses:

AnotherCopyAndAdjustAlgorithm, CopyAndAdjustNoLogAlgorithm, FastCopyAndAdjustAlgorithm

public class CopyAndAdjustAlgorithm
extends java.lang.Object
implements ITrackingAlgorithm

Constructor Summary

Constructors

Constructor and Description
CopyAndAdjustAlgorithm()

Method Summary

Methods

Modifier and Type	Method and Description
void	beforeBatch(int firstFrameNo) Invoked before processing batch. Eg, say a user wants to process 10 frames: beforeBatch is called once before beforeStep is called 10 times Typically used to show a dialog and acquire algorithm parameters.
void	beforeBatchNotSafe(int firstFrameNo)
void	beforeStep(int frameNo) Invoked before every step()
java.lang.String	getAbbrev() Abbreviation, used for display in the frame tree
java.lang.String	getClassName() Class name, used for instantiation.
java.lang.String	getName() A friendly name, to be shown to the user.
void	step(int frameNo, VPoint translation) This is the main function to implement - the one that performs the tracking / segmentation.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CopyAndAdjustAlgorithm

public CopyAndAdjustAlgorithm()

Method Detail

getName

public java.lang.String getName()

Description copied from interface: ITrackingAlgorithm

A friendly name, to be shown to the user.

Specified by:

getName in interface ITrackingAlgorithm

Returns:

friendly name

getClassName

public java.lang.String getClassName()

Description copied from interface: ITrackingAlgorithm

Class name, used for instantiation.

Specified by:

getClassName in interface ITrackingAlgorithm

Returns:

class name

getAbbrev

public java.lang.String getAbbrev()

Description copied from interface: ITrackingAlgorithm

Abbreviation, used for display in the frame tree

Specified by:

getAbbrev in interface ITrackingAlgorithm

step

public void step(int frameNo,
        VPoint translation)

Description copied from interface: ITrackingAlgorithm

This is the main function to implement - the one that performs the tracking / segmentation.

Typically, from within this function you'll call:
CurrentExperiment.getFrame(int frameNo)
CurrentExperiment.getBacteriasForFrame(int frameNo)
CurrentExperiment.saveROI(ij.gui.Roi roi, int frameNo, Bacteria b, int roiType)

Specified by:

step in interface ITrackingAlgorithm

Parameters:

frameNo - the frame to process

translation - translation with regards to the previous frame (not necessarily frameNo-1, if that one is ignored)

beforeStep

public void beforeStep(int frameNo)

Description copied from interface: ITrackingAlgorithm

Invoked before every step()

Specified by:

beforeStep in interface ITrackingAlgorithm

beforeBatch

public void beforeBatch(int firstFrameNo)

Description copied from interface: ITrackingAlgorithm

Invoked before processing batch.
Eg, say a user wants to process 10 frames:
beforeBatch is called once before
beforeStep is called 10 times
Typically used to show a dialog and acquire algorithm parameters.

Specified by:

beforeBatch in interface ITrackingAlgorithm

beforeBatchNotSafe

public void beforeBatchNotSafe(int firstFrameNo)