bactimas.algorithms

Class FastCopyAndAdjustAlgorithm

java.lang.Object

bactimas.algorithms.CopyAndAdjustAlgorithm

bactimas.algorithms.FastCopyAndAdjustAlgorithm

All Implemented Interfaces:

ITrackingAlgorithm

public class FastCopyAndAdjustAlgorithm
extends CopyAndAdjustAlgorithm

Constructor Summary

Constructors

Constructor and Description
FastCopyAndAdjustAlgorithm()

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getAbbrev() Abbreviation, used for display in the frame tree
java.lang.String	getName() A friendly name, to be shown to the user.
void	step(int frameNo, VPoint translation) This is the main function to implement - the one that performs the tracking / segmentation.

Methods inherited from class bactimas.algorithms.CopyAndAdjustAlgorithm

beforeBatch, beforeBatchNotSafe, beforeStep, getClassName

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastCopyAndAdjustAlgorithm

public FastCopyAndAdjustAlgorithm()

Method Detail

getName

public java.lang.String getName()

Description copied from interface: ITrackingAlgorithm

A friendly name, to be shown to the user.

Specified by:

getName in interface ITrackingAlgorithm

Overrides:

getName in class CopyAndAdjustAlgorithm

Returns:

friendly name

getAbbrev

public java.lang.String getAbbrev()

Description copied from interface: ITrackingAlgorithm

Abbreviation, used for display in the frame tree

Specified by:

getAbbrev in interface ITrackingAlgorithm

Overrides:

getAbbrev in class CopyAndAdjustAlgorithm

step

public void step(int frameNo,
        VPoint translation)

Description copied from interface: ITrackingAlgorithm

This is the main function to implement - the one that performs the tracking / segmentation.

Typically, from within this function you'll call:
CurrentExperiment.getFrame(int frameNo)
CurrentExperiment.getBacteriasForFrame(int frameNo)
CurrentExperiment.saveROI(ij.gui.Roi roi, int frameNo, Bacteria b, int roiType)

Specified by:

step in interface ITrackingAlgorithm

Overrides:

step in class CopyAndAdjustAlgorithm

Parameters:

frameNo - the frame to process

translation - translation with regards to the previous frame (not necessarily frameNo-1, if that one is ignored)