bactimas.algorithms

Class CopyAndAdjustNoLogAlgorithm

java.lang.Object

bactimas.algorithms.CopyAndAdjustAlgorithm

bactimas.algorithms.CopyAndAdjustNoLogAlgorithm

All Implemented Interfaces:

ITrackingAlgorithm

public class CopyAndAdjustNoLogAlgorithm
extends CopyAndAdjustAlgorithm

Constructor Summary

Constructors

Constructor and Description
CopyAndAdjustNoLogAlgorithm()

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getAbbrev() Abbreviation, used for display in the frame tree
java.lang.String	getClassName() Class name, used for instantiation.
java.lang.String	getName() A friendly name, to be shown to the user.
void	step(int frameNo, VPoint translation) This is the main function to implement - the one that performs the tracking / segmentation.

Methods inherited from class bactimas.algorithms.CopyAndAdjustAlgorithm

beforeBatch, beforeBatchNotSafe, beforeStep

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CopyAndAdjustNoLogAlgorithm

public CopyAndAdjustNoLogAlgorithm()

Method Detail

getName

public java.lang.String getName()

Description copied from interface: ITrackingAlgorithm

A friendly name, to be shown to the user.

Specified by:

getName in interface ITrackingAlgorithm

Overrides:

getName in class CopyAndAdjustAlgorithm

Returns:

friendly name

getClassName

public java.lang.String getClassName()

Description copied from interface: ITrackingAlgorithm

Class name, used for instantiation.

Specified by:

getClassName in interface ITrackingAlgorithm

Overrides:

getClassName in class CopyAndAdjustAlgorithm

Returns:

class name

getAbbrev

public java.lang.String getAbbrev()

Description copied from interface: ITrackingAlgorithm

Abbreviation, used for display in the frame tree

Specified by:

getAbbrev in interface ITrackingAlgorithm

Overrides:

getAbbrev in class CopyAndAdjustAlgorithm

step

public void step(int frameNo,
        VPoint translation)

Description copied from interface: ITrackingAlgorithm

This is the main function to implement - the one that performs the tracking / segmentation.

Typically, from within this function you'll call:
CurrentExperiment.getFrame(int frameNo)
CurrentExperiment.getBacteriasForFrame(int frameNo)
CurrentExperiment.saveROI(ij.gui.Roi roi, int frameNo, Bacteria b, int roiType)

Specified by:

step in interface ITrackingAlgorithm

Overrides:

step in class CopyAndAdjustAlgorithm

Parameters:

frameNo - the frame to process

translation - translation with regards to the previous frame (not necessarily frameNo-1, if that one is ignored)