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C

c - Variable in class signalprocesser.voronoi.eventqueue.VSiteEvent
 
calcParabolaConstants(double) - Method in class signalprocesser.voronoi.eventqueue.VSiteEvent
 
calculateAreaOfShape(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.VoronoiShared
 
calculateAreaOfShape(Shape) - Static method in class signalprocesser.voronoi.VoronoiShared
 
calculateAreaOfShape(PathIterator) - Static method in class signalprocesser.voronoi.VoronoiShared
 
calculateAreaOfTriangle(double, double, double) - Static method in class signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VVoronoiCell
 
calculateAreaOfTriangle(double, double, double) - Static method in class signalprocesser.voronoi.representation.voronoicell.VVoronoiCell
 
calculateAveragePoint() - Method in class signalprocesser.voronoi.representation.triangulation.VCluster
 
calculateCenter(VSiteEvent, VSiteEvent, VSiteEvent) - Static method in class signalprocesser.voronoi.VoronoiShared
 
calculateCutOff(TriangulationRepresentation) - Method in class signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation.CalcCutOff
 
calculateLengthCutoff() - Method in class signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation
 
calculatePerimeterOfShape(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.VoronoiShared
 
captureHeader(CSVReader) - Method in class au.com.bytecode.opencsv.bean.ColumnPositionMappingStrategy
 
captureHeader(CSVReader) - Method in class au.com.bytecode.opencsv.bean.HeaderColumnNameMappingStrategy
 
captureHeader(CSVReader) - Method in interface au.com.bytecode.opencsv.bean.MappingStrategy
Implementation of this method can grab the header line before parsing begins to use to map columns to bean properties.
CDATA_TYPE - Static variable in class bactimas.bintree.DOM
 
checkError() - Method in class au.com.bytecode.opencsv.CSVWriter
Checks to see if the there has been an error in the printstream.
checkInitConfAndDataFolder() - Static method in class bactimas.util.S
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.representation.boundaryproblem.BoundaryProblemRepresentation
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VoronoiCellRepresentation
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in interface signalprocesser.voronoi.representation.RepresentationInterface
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.representation.simpletriangulation.SimpleTriangulationRepresentation
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.representation.voronoicell.VoronoiCellRepresentation
 
circleEvent(VLinkedNode, VLinkedNode, VLinkedNode, int, int) - Method in class signalprocesser.voronoi.VoronoiTest.TestRepresentationWrapper
 
clear() - Method in class bactimas.gui.frametree.FrameTree
Remove all nodes except the root node.
clearConnectedVertexs() - Method in class signalprocesser.voronoi.representation.boundaryproblem.VVertex
 
clearEdges() - Method in class signalprocesser.voronoi.representation.triangulation.VVertex
 
CLOBBUFFERSIZE - Static variable in class au.com.bytecode.opencsv.ResultSetHelperService
 
cloneCollection(Collection) - Static method in class signalprocesser.shared.Reflect
 
cloneCollection(Collection, int) - Static method in class signalprocesser.shared.Reflect
 
cloneLeafNode() - Method in class signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VLeafNode
 
cloneLinkedNode() - Method in class signalprocesser.voronoi.statusstructure.VLinkedNode
 
cloneObject(Object) - Static method in class signalprocesser.shared.Reflect
 
cloneObject(Object, int) - Static method in class signalprocesser.shared.Reflect
 
cloneVector(Vector) - Static method in class signalprocesser.shared.Reflect
 
cloneVector(Vector, int) - Static method in class signalprocesser.shared.Reflect
 
close() - Method in class au.com.bytecode.opencsv.CSVReader
Closes the underlying reader.
close() - Method in class au.com.bytecode.opencsv.CSVWriter
Close the underlying stream writer flushing any buffered content.
closeResultsWindow() - Static method in class bactimas.datamodel.CurrentExperiment
 
colToValue(Color) - Static method in class bactimas.alg.MovieProcessor
 
ColumnPositionMappingStrategy<T> - Class in au.com.bytecode.opencsv.bean
Copyright 2007 Kyle Miller.
ColumnPositionMappingStrategy() - Constructor for class au.com.bytecode.opencsv.bean.ColumnPositionMappingStrategy
 
COMMENT_TYPE - Static variable in class bactimas.bintree.DOM
 
compareTo(Object) - Method in class bactimas.alg.ForcedPoint
 
compareTo(Object) - Method in class bactimas.alg.PointSum
 
compareTo(Object) - Method in class bactimas.bintree.Node.TimeIntensity
 
compareTo(Object) - Method in class bactimas.bintree.Node.TimeSize
 
ComputerRoiNode - Class in bactimas.gui.frametree
 
ComputerRoiNode(BacteriaNode) - Constructor for class bactimas.gui.frametree.ComputerRoiNode
 
concat(String[]...) - Static method in class bactimas.util.S
 
connect(Node) - Method in class bactimas.bintree.Node
 
ConnectionManager - Class in bactimas.db
 
ConnectionManager() - Constructor for class bactimas.db.ConnectionManager
 
ControlPanel - Class in bactimas.gui
 
ControlPanel(TitledFrame) - Constructor for class bactimas.gui.ControlPanel
 
convertPointsToBoundaryProblemPoints(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
convertPointsToSimpleTriangulationPoints(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
convertPointsToTriangulationPoints(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
convertPointsToVoronoiCellPoints(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
convertPointsToVPoints(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
CopyAndAdjustAlgorithm - Class in bactimas.algorithms
 
CopyAndAdjustAlgorithm() - Constructor for class bactimas.algorithms.CopyAndAdjustAlgorithm
 
CopyAndAdjustNoLogAlgorithm - Class in bactimas.algorithms
 
CopyAndAdjustNoLogAlgorithm() - Constructor for class bactimas.algorithms.CopyAndAdjustNoLogAlgorithm
 
copyInputStream(InputStream, OutputStream) - Static method in class bactimas.util.S
 
CountryData - Class in signalprocesser.voronoi.tools
 
CountryData() - Constructor for class signalprocesser.voronoi.tools.CountryData
 
CountryListModel - Class in signalprocesser.voronoi.tools
 
CountryListModel(JComboBox<?>, ArrayList<String>) - Constructor for class signalprocesser.voronoi.tools.CountryListModel
 
CountryListModel.CountryListRender - Class in signalprocesser.voronoi.tools
 
CountryListModel.CountryListRender() - Constructor for class signalprocesser.voronoi.tools.CountryListModel.CountryListRender
 
createArea(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.shapegeneration.ShapeGeneration
 
createBean() - Method in class au.com.bytecode.opencsv.bean.HeaderColumnNameMappingStrategy
 
createBean() - Method in interface au.com.bytecode.opencsv.bean.MappingStrategy
 
createBoundaryProblemRepresentation() - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
createDefaultStatusStructure() - Static method in class signalprocesser.voronoi.statusstructure.AbstractStatusStructure
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.AbstractRepresentation
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.boundaryproblem.BoundaryProblemRepresentation
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VoronoiCellRepresentation
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.simpletriangulation.SimpleTriangulationRepresentation
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation
 
createPoint(int, int) - Method in class signalprocesser.voronoi.representation.voronoicell.VoronoiCellRepresentation
 
createSelectionFromMask(ImageProcessor, VPoint) - Static method in class bactimas.alg.MovieProcessor
 
createShape(Area) - Static method in class signalprocesser.voronoi.shapegeneration.ShapeGeneration
 
createShape(PathIterator) - Static method in class signalprocesser.voronoi.shapegeneration.ShapeGeneration
 
createShape(ArrayList<VPoint>) - Static method in class signalprocesser.voronoi.shapegeneration.ShapeGeneration
 
createShapeOutline(String, Rectangle, Font) - Static method in class signalprocesser.voronoi.shapegeneration.ShapeGeneration
Note: shape returning is not always exactly inside the bounds - for example, if the text requested is a "g" - the foot of the g may over hang the lower bounds.
createSimpleTriangulationRepresentation() - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
createTestCase() - Method in class signalprocesser.voronoi.tools.TestSuite
 
createTriangulationRepresentation() - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
createVoronoiCellRepresentation() - Static method in class signalprocesser.voronoi.representation.RepresentationFactory
 
CSVIterator - Class in au.com.bytecode.opencsv
 
CSVIterator(CSVReader) - Constructor for class au.com.bytecode.opencsv.CSVIterator
 
CSVParser - Class in au.com.bytecode.opencsv
A very simple CSV parser released under a commercial-friendly license.
CSVParser() - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser using a comma for the separator.
CSVParser(char) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser with supplied separator.
CSVParser(char, char) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser with supplied separator and quote char.
CSVParser(char, char, char) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVReader with supplied separator and quote char.
CSVParser(char, char, char, boolean) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser with supplied separator and quote char.
CSVParser(char, char, char, boolean, boolean) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser with supplied separator and quote char.
CSVParser(char, char, char, boolean, boolean, boolean) - Constructor for class au.com.bytecode.opencsv.CSVParser
Constructs CSVParser with supplied separator and quote char.
CSVParserBuilder - Class in au.com.bytecode.opencsv
Builder for creating a CSVParser.
CSVParserBuilder() - Constructor for class au.com.bytecode.opencsv.CSVParserBuilder
 
CSVReader - Class in au.com.bytecode.opencsv
A very simple CSV reader released under a commercial-friendly license.
CSVReader(Reader) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader using a comma for the separator.
CSVReader(Reader, char) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator.
CSVReader(Reader, char, char) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, char, char, boolean) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator, quote char and quote handling behavior.
CSVReader(Reader, char, char, char) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, char, char, int) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, char, char, char, int) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, char, char, char, int, boolean) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, char, char, char, int, boolean, boolean) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReader(Reader, int, CSVParser) - Constructor for class au.com.bytecode.opencsv.CSVReader
Constructs CSVReader with supplied separator and quote char.
CSVReaderBuilder - Class in au.com.bytecode.opencsv
Builder for creating a CSVReader.
CsvToBean<T> - Class in au.com.bytecode.opencsv.bean
 
CsvToBean() - Constructor for class au.com.bytecode.opencsv.bean.CsvToBean
 
CSVWriter - Class in au.com.bytecode.opencsv
A very simple CSV writer released under a commercial-friendly license.
CSVWriter(Writer) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter using a comma for the separator.
CSVWriter(Writer, char) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter with supplied separator.
CSVWriter(Writer, char, char) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter with supplied separator and quote char.
CSVWriter(Writer, char, char, char) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter with supplied separator and quote char.
CSVWriter(Writer, char, char, String) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter with supplied separator and quote char.
CSVWriter(Writer, char, char, char, String) - Constructor for class au.com.bytecode.opencsv.CSVWriter
Constructs CSVWriter with supplied separator, quote char, escape char and line ending.
CurrentExperiment - Class in bactimas.datamodel
 
CurrentExperiment() - Constructor for class bactimas.datamodel.CurrentExperiment
 
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